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Viral entry into the host and possible immune reaction
Viruses most often enter the host through respiratory, gut or genital mucosal surfaces, although they also may directly enter the blood stream via hypodermic syringe, animal bite or insect bite. Entry through the blood is likely to shunt the virus directly into the spleen, where T cells, B cells and antigen-presenting cells (APC) are readily available to initiate an immune response. In the more common peripheral routes the viruses will likely encounter dendritic cells that coat the various mucosa, which then carry them into the circulation and home to peripheral tissue like lymph nodes, where they trigger the immune response involving B and T lymphocytes.

The survival of viruses depends on the survival of susceptible hosts. In fact, there is no evolutionary advantage for the pathogen to cause the end of its host too rapidly. Therefore, the vertebrate and viruses have co-evolved complementary facets to maintain a delicate balance between life and death. A virus should not be overtly cytolytic and must regulate its lytic potential. This type of virus will be able to persist into the host because it does not kill the host cell too rapidly or produce excessive damage. Furthermore, viruses try to avoid detection and elimination by the host immune system. Therefore, the outcome of many viral infections is immune containment rather than complete eradication of infection. The consequence of this immune containment is the development of persistent viral infections that last as long as the host lives.

Persistent viral infections have traditionally been divided into two categories: chronic infection and latent infection. There are cases of chronic viral infections (viruses are actively replicating), like the hepatitis B virus, that are maintained under control. This can be achieved, at least in part, through the development of cytotoxic T lymphocytes (CTL), which have the capacity to lyse and kill infected cells before the production of progeny virions. Latent infection is usually asymptomatic, as opposed to chronic infection that is symptomatic, and takes place when the viral genome persists in integrated or episomal form. In this case, infectious particles are generally not produced except during intermittent episodes of reactivation, as for Herpes virus. This distinction between chronic and latent is not mutually exclusive. For example, HIV-1 infects the non-dividing cells like monocytes/macrophages and dendritic cells or the dividing cells like CD4+ T lymphocytes. In this case, the infection can either be chronic, due to constant viral production by infected T lymphocytes, or latent because HIV-1 genome is integrated into the host chromosome and is waiting to be activated.

It is very common to encounter viruses that tend to fight the host defense mechanisms to facilitate their own survival for spreading the infection. Viruses have come up with many ways to escape recognition and elimination by host antibodies and T cell response. Some viruses have evolved molecules that override apoptotic programs (cell death), prevent viral recognition or immune cell activation to promote infected-cell survival until virus assembly is complete, persistence is established or cellular transformation occurs. Apparently, the HIV-1 has developed several mechanisms to escape the immune system, such as by direct or indirect killing of immune cells. HIV-1 has also found the way to escape to the CTL response (specialized T lymphocytes that kill infected cells) or antiretroviral drug treatments by the usage of high rate mutations into viral proteins. Mymetics has discovered that, in addition to the different immune escape strategies used by HIV-1, the gp41 viral transmembrane glycoprotein of HIV-1, as well as transmembrane glycoprotein from other retroviruses (FIV, SIV, HTLV-1), have evolved to mimic the interleukine-2 (IL-2) from their infected host. Consequently, an immune response toward the gp41 might also potentially cross-react with the host IL-2, which may lead to severe defects in the IL-2 cytokine pathway and contribute seriously to impair the cytokine network from the immune system, thus weakening the host's defense.
 
 
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